This page contains files giving the strand orientation and position of variants of the most common genotyping chips on genome builds 36 to 38 inclusive. New files will be added as new genome builds are released
Note: Genome build 35 links have now been removed from all the pages. The files are though still available and are still created by default for all new chips, in the event you require one of these files please email me
If you have a chip and/or build that is not listed here please contact me, Will Rayner ( william dot rayner at helmholtz-munich dot de and/or will dot rayner at strand dot org dot uk) and I can create and post the file to this page.The Chipendium has also moved, please see the links from the new site.
<bed-file-stem> | is the name of your binary ped set minus the .bed, .bim or .fam extension |
<strand-file> | is appropriate strand file for you chip and current strand orientation (TOP, SOURCE, ILMN) |
<output-file-stem> | is the name of the new output file to create again minus the .bed, .bim or .fam extension |
HumanHap240S_11216501_A
BDCHP-1X10-HUMANHAP240S_11216501_A-b36-strand.zip
BDCHP-1X10-HUMANHAP240S_11216501_A-b37-strand.zip
BDCHP-1X10-HUMANHAP240S_11216501_A-b38-strand.zip
HumanHap300v1-1_11219278_C
BDCHP-1x10-HUMANHAP300v1-1_11219278_C-b36-strand.zip
BDCHP-1x10-HUMANHAP300v1-1_11219278_C-b37-strand.zip
BDCHP-1x10-HUMANHAP300v1-1_11219278_C-b38-strand.zip
HumanHap300v1-1_11219278_C Source Strand Versions
BDCHP-1x10-HUMANHAP300v1-1_11219278_C-b36-Source-Strand.zip
BDCHP-1x10-HUMANHAP300v1-1_11219278_C-b37-Source-Strand.zip
HumanHap300v2_A
HumanHap300v2_A-b36-strand.zip
HumanHap300v2_A-b37-strand.zip
HumanHap300v2_A-b38-strand.zip
Human CNV370v1_C
HumanCNV370v1_C-b36-strand.zip
HumanCNV370v1_C-b37-strand.zip
HumanCNV370v1_C-b38-strand.zip
Human CNV370v1_C Source Strand Versions
HumanCNV370v1_C-b36-SourceStrand.zip
HumanCNV370v1_C-b37-SourceStrand.zip
HumanCNV370-Quadv3_C
HumanCNV370-Quadv3_C-b36-strand.zip
HumanCNV370-Quadv3_C-b37-strand.zip
HumanCNV370-Quadv3_C-b38-strand.zip
HumanHap550_11218540_C
BDCHP-1X10-HUMANHAP550_11218540_C-b36-strand.zip
BDCHP-1X10-HUMANHAP550_11218540_C-b37-strand.zip
BDCHP-1X10-HUMANHAP550_11218540_C-b38-strand.zip
HumanHap550-2v3_B
HumanHap550-2v3_B-b36-strand.zip
HumanHap550-2v3_B-b37-strand.zip
HumanHap550-2v3_B-b38-strand.zip
HumanHap550-2v3_B Source Strand Versions
HumanHap550-2v3_B-b36-SourceStrand.zip
HumanHap550-2v3_B-b37-SourceStrand.zip
HumanHap550-2v3_B Ilmn Strand Versions
HumanHap550-2v3_B-b35-Illmn.strand.zip
HumanHap550-2v3_B-b36-Illmn.strand.zip
HumanHap550-2v3_B-b37-Illmn.strand.zip
HumanHap550v3_A
HumanHap550v3_A-b36-strand.zip
HumanHap550v3_A-b37-strand.zip
HumanHap550v3_A-b38-strand.zip
Human610Quadv1_B
Human610-Quadv1_B-b36-strand.zip
Human610-Quadv1_B-b37-strand.zip
Human610Quadv1_B-b38-strand.zip
Human610Quadv1_B Source Strand Versions
Human610-Quadv1_B-b36-SourceStrand.zip
Human610-Quadv1_B-b37-SourceStrand.zip
Human610-Quadv1_H
human610-quadv1_h-b36-strand.zip
human610-quadv1_h-b37-strand.zip
human610-quadv1_h-b38-strand.zip
HumanHap650Yv3_A
HumanHap650Yv3_A-b36-strand.zip
HumanHap650Yv3_A-b37-strand.zip
HumanHap650Yv3_A-b38-strand.zip
Source Strand Versions
HumanHap650Yv3_A-b36-SourceStrand.zip
HumanHap650Yv3_A-b37-SourceStrand.zip
Human660W-Quad_v1_A
Human660W-Quad_v1_A-b36-strand.zip
Human660W-Quad_v1_A-b37-strand.zip
Human660W-Quad_v1_A-b38-strand.zip
Human660W-Quad_v1_C
Human660W-Quad_v1_C-b36.zip
Human660W-Quad_v1_C-b37.zip
Human660W-Quad_v1_C-b38.zip
Human660W-Quadv1_H
human660w-quad_v1_h-b36-strand.zip
human660w-quad_v1_h-b37-strand.zip
human660w-quad_v1_h-b38-strand.zip
Human670-QuadCustom_v1_A
Human670-QuadCustom_v1_A-b36-strand.zip
Human670-QuadCustom_v1_A-b37-strand.zip
Human670-QuadCustom_v1_A-b38-strand.zip
HumanOmniExpress-12v1_A
HumanOmniExpress-12v1_A-b36v2-strand.zip
HumanOmniExpress-12v1_A-b37-strand.zip
HumanOmniExpress-12v1_A-b38-strand.zip
HumanOmniExpress12v1_A AB to TOP alleles Mapping
HumanOmniExpress-12v1_A.update_alleles.txt.gz
Zip version for those with problems downloading the gzip version
above
HumanOmniExpress-12v1_A.update_alleles.txt.zip
HumanOmniExpress-12v1-1_A
HumanOmniExpress-12v1-1_A-b36-strand.zip
HumanOmniExpress-12v1-1_A-b37-strand.zip
HumanOmniExpress-12v1-1_A-b38-strand.zip
HumanOmniExpress-12v1_B
HumanOmniExpress-12v1-Multi_B-b36-strand.zip
HumanOmniExpress-12v1-Multi_B-b37-strand.zip
HumanOmniExpress-12v1-Multi_B-b38-strand.zip
HumanOmniExpress-12v1-1_B
HumanOmniExpress-12v1-1_B-b36-strand.zip
HumanOmniExpress-12v1-1_B-b37-strand.zip
HumanOmniExpress-12v1-1_B-b38-strand.zip
HumanOmniExpress-12v1_C
HumanOmniExpress-12v1-Multi_C-b36-strand.zip
HumanOmniExpress-12v1-Multi_C-b37-strand.zip
HumanOmniExpress-12v1-Multi_C-b38-strand.zip
HumanOmniExpress-12v1_H
HumanOmniExpress-12v1_H-b36-strand.zip
HumanOmniExpress-12v1_H-b37-strand.zip
HumanOmniExpress-12v1_H-b38-strand.zip
HumanOmniExpress-12v1_J
HumanOmniExpress-12v1_J-b36-strand.zip
HumanOmniExpress-12v1_J-b37.strand.zip
HumanOmniExpress-12v1_J-b38-strand.zip
HumanOmniExpress-12v1_J_FFPE
HumanOmniExpress-12v1_J_FFPE-b36-strand.zip
HumanOmniExpress-12v1_J_FFPE-b37-strand.zip
HumanOmniExpress-12v1_J_FFPE-b38-strand.zip
humanomniexpress-24v1-0_a
humanomniexpress-24v1-0_a-b36-strand.zip
humanomniexpress-24v1-0_a-b37-strand.zip
humanomniexpress-24v1-0_a-b38-strand.zip
humanomniexpress-24v1-1-a
humanomniexpress-24-v1-1-a-b36-strand.zip
humanomniexpress-24-v1-1-a-b37-strand.zip
humanomniexpress-24-v1-1-a-b38-strand.zip
HumanOmniExpress-24-v1-0-B
HumanOmniExpress-24-v1-0-B-b36-strand.zip
HumanOmniExpress-24-v1-0-B-b37-strand.zip
HumanOmniExpress-24-v1-0-B-b38-strand.zip
InfiniumOmniExpress-24v1-2_A1
InfiniumOmniExpress-24v1-2_A1-b36-strand.zip
InfiniumOmniExpress-24v1-2_A1-b37-strand.zip
InfiniumOmniExpress-24v1-2_A1-b38-strand.zip
InfiniumOmniExpress-24v1-3_A1
InfiniumOmniExpress-24v1-3_A1-b37-strand.zip
InfiniumOmniExpress-24v1-3_A1-b38-strand.zip
HumanOmniExpressExome-8v1_A
HumanOmniExpressExome-8v1_A-b36-strand.zip
HumanOmniExpressExome-8v1_A-b37-strand.zip
HumanOmniExpressExome-8v1_A-b38-strand.zip
humanomniexpressexome-8v1-0_a
humanomniexpressexome-8v1-0_a-b36-strand.zip
humanomniexpressexome-8v1-0_a-b37-strand.zip
humanomniexpressexome-8v1-0_a-b38-strand.zip
HumanOmniExpressExome-8-v1-0-B
HumanOmniExpressExome-8-v1-0-B-b36-strand.zip
HumanOmniExpressExome-8-v1-0-B-b37-strand.zip
HumanOmniExpressExome-8-v1-0-B-b38-strand.zip
HumanOmniExpressExome-8v1-2_A
HumanOmniExpressExome-8v1-2_A-b36-strand.zip
HumanOmniExpressExome-8v1-2_A-b37-strand.zip
HumanOmniExpressExome-8v1-2_A-b38-strand.zip
HumanOmniExpressExome-8v1-2_A Source Strand Versions
HumanOmniExpressExome-8v1-2_A-b36-Source.zip
HumanOmniExpressExome-8v1-2_A-b37-Source.zip
HumanOmniExpressExome-8v1-2_A-b38-Source.zip
HumanOmniExpressExome-8-v1-2-B
HumanOmniExpressExome-8-v1-2-B-b36-strand.zip
HumanOmniExpressExome-8-v1-2-B-b37-strand.zip
HumanOmniExpressExome-8-v1-2-B-b38-strand.zip
OmniExpressExome-8v1-1_A
OmniExpressExome-8v1-1_A-b36-strand.zip
OmniExpressExome-8v1-1_A-b37-strand.zip
OmniExpressExome-8v1-1_A-b38-strand.zip
OmniExpressExome-8v1-1_B
OmniExpressExome-8v1-1_B-b36-strand.zip
OmniExpressExome-8v1-1_B-b37-strand.zip
OmniExpressExome-8v1-1_B-b38-strand.zip
HumanOmniExpressExome-8-v1-1-C
HumanOmniExpressExome-8-v1-1-C-b36-strand.zip
HumanOmniExpressExome-8-v1-1-C-b37-strand.zip
HumanOmniExpressExome-8-v1-1-C-b38-strand.zip
InfiniumOmniExpressExome-8v1-3_A
InfiniumOmniExpressExome-8v1-3_A-b36-strand.zip
InfiniumOmniExpressExome-8v1-3_A-b37-strand.zip
InfiniumOmniExpressExome-8v1-3_A-b38-strand.zip
InfiniumOmniExpressExome-8v1-4_A1
InfiniumOmniExpressExome-8v1-4_A1-b36-strand.zip
InfiniumOmniExpressExome-8v1-4_A1-b37-strand.zip
InfiniumOmniExpressExome-8v1-4_A1-b38-strand.zip
InfiniumOmniExpressExome-8v1-6_A1
InfiniumOmniExpressExome-8v1-6_A1-b36-strand.zip
InfiniumOmniExpressExome-8v1-6_A1-b37-strand.zip
InfiniumOmniExpressExome-8v1-6_A1-b38-strand.zip
HumanOmni25Exome-8v1_A
HumanOmni25Exome-8v1_A-b36-strand.zip
HumanOmni25Exome-8v1_A-b37-strand.zip
HumanOmni25Exome-8v1_A-b38-strand.zip
HumanOmni2-5Exome-8-v1-1-A
HumanOmni2-5Exome-8-v1-1-A-b36-strand.zip
HumanOmni2-5Exome-8-v1-1-A-b37-strand.zip
HumanOmni2-5Exome-8-v1-1-A-b38-strand.zip
InfiniumOmni2.5Exome-8v1-2_A
InfiniumOmni2.5Exome-8v1-2_A-b36-strand.zip
InfiniumOmni2.5Exome-8v1-2_A-b37-strand.zip
InfiniumOmni2.5Exome-8v1-2_A-b38-strand.zip
InfiniumOmni2-5Exome-8v1-3_A1
InfiniumOmni2-5Exome-8v1-3_A1-b36-strand.zip
InfiniumOmni2-5Exome-8v1-3_A1-b37-strand.zip
InfiniumOmni2-5Exome-8v1-3_A1-b38-strand.zip
InfiniumOmni2-5Exome-8v1-4_A1
InfiniumOmni2-5Exome-8v1-4_A1-b37-strand.zip
InfiniumOmni2-5Exome-8v1-4_A1-b38-strand.zip
InfiniumOmni2-5Exome-8v1-5_A1
InfiniumOmni2-5Exome-8v1-5_A1-b37-strand.zip
InfiniumOmni2-5Exome-8v1-5_A1-b38-strand.zip
HumanOmniZhongHua-8v1_B
HumanOmniZhongHua-8v1_B-b36-strand.zip
HumanOmniZhongHua-8v1_B-b37-strand.zip
HumanOmniZhongHua-8v1_B-b38-strand.zip
HumanOmniZhongHua-8v1-1_A
humanomnizhonghua-8v1-1_a-b36-strand.zip
humanomnizhonghua-8v1-1_a-b37-strand.zip
humanomnizhonghua-8v1-1_a-b38-strand.zip
HumanOmniZhongHua-8v1-2_A
HumanOmniZhongHua-8v1-2_A-b36-strand.zip
HumanOmniZhongHua-8v1-2_A-b37-strand.zip
HumanOmniZhongHua-8v1-2_A-b38-strand.zip
InfiniumOmniZhongHua-8v1-3_A1
InfiniumOmniZhongHua-8v1-3_A1-b36-strand.zip
InfiniumOmniZhongHua-8v1-3_A1-b37-strand.zip
InfiniumOmniZhongHua-8v1-3_A1-b38-strand.zip
InfiniumOmniZhongHua-8v1-4_A1
InfiniumOmniZhongHua-8v1-4_A1-b37-strand.zip
InfiniumOmniZhongHua-8v1-4_A1-b38-strand.zip
InfiniumOmniZhongHua-8v1-3_A2
InfiniumOmniZhongHua-8v1-3_A2-b36-strand.zip
InfiniumOmniZhongHua-8v1-3_A2-b37-strand.zip
InfiniumOmniZhongHua-8v1-3_A2-b38-strand.zip
Human1Mv1_C
Human1Mv1_C-b36-strand.zip
Human1Mv1_C-b37-strand.zip
Human1Mv1_C-b38-strand.zip
Human1M-Duov3_B
Human1M-Duov3_B-b36-strand.zip
Human1MDuo-b37-strand-v2.zip
Updated versions with INDEL alleles corrected
Human1M-Duov3_B-b37-strand.zip
Human1M-Duov3_B-b38-strand.zip
Human1M-Duov3_C
Human1MDuov3_C-b37-strand.zip
Updated versions with INDEL alleles corrected
Human1M-Duov3_C-b36-strand.zip
Human1M-Duov3_C-b37-strand.zip
Human1M-Duov3_C-b38-strand.zip
human1m-duov3_h
human1m-duov3_h-b36-strand.zip
human1m-duov3_h-b37-strand.zip
human1m-duov3_h-b38-strand.zip
HumanOmni1-Quad_v1-0_B
HumanOmni1-Quad_v1-0_B-b36-strand.zip
HumanOmni1-Quad_v1-0_B-b37-strand.zip
HumanOmni1-Quad_v1-0_B-b38-strand.zip
HumanOmni1-Quad_v1-0_B Source Strand Versions
HumanOmni1-Quad_v1-0_B-b36-SOURCE.strand.zip
HumanOmni1-Quad_v1-0_B-b37-SOURCE.strand.zip
HumanOmni1-Quad_v1-0_C
HumanOmni1-Quad_v1-0_C-b36-strand.zip
HumanOmni1-Quad_v1-0_C-b37-strand.zip
HumanOmni1-Quad_v1-0_C-b38-strand.zip
HumanOmni1-Quad_v1-0_H
HumanOmni1-Quad_v1-0_H-b36-strand.zip
HumanOmni1-Quad_v1-0_H-b37-strand.zip
HumanOmni1-Quad_v1-0_H-b38-strand.zip
humanomni1-quad_v1-0-multi_h
humanomni1-quad_v1-0-multi_h-b36-strand.zip
humanomni1-quad_v1-0-multi_h-b37-strand.zip
humanomni1-quad_v1-0-multi_h-b38-strand.zip
HumanOmni1S-8v1_H
HumanOmni1S-8v1_H-b36-strand.zip
HumanOmni1S-8v1_H-b37-strand.zip
HumanOmni1S-8v1_H-b38-strand.zip
Human1.2MDuoCustom_v1_A
Human1-2M-DuoCustom_v1_A-b36-strand.zip
Human1-2M-DuoCustom_v1_A-b37-strand.zip
Human1-2M-DuoCustom_v1_A-b38-strand.zip
HumanOmni2.5-4v1_B
HumanOmni2.5-4v1_B-b36-strand.zip
HumanOmni2.5-4v1_B-b37-strand.zip
HumanOmni2.5-4v1_B-b38-strand.zip
HumanOmni2.5-4v1_D
HumanOmni2.5-4v1_D-b36-strand.zip
HumanOmni2.5-4v1_D-b37-strand.zip
HumanOmni2.5-4v1_D-b38-strand.zip
HumanOmni2.5-4v1_H
HumanOmni2.5-4v1_H-b36-strand.zip
HumanOmni2.5-4v1_H-b37-strand.zip
HumanOmni2.5-4v1_H-b38-strand.zip
HumanOmni2.5-8v1_A
HumanOmni2.5-8v1_A-b36-strand.zip
HumanOmni2.5-8v1_A-b37-strand.zip
HumanOmni2.5-8v1_A-b38-strand.zip
Source Strand Versions
HumanOmni2.5-8v1_A-b36-Source.strand.zip
HumanOmni2.5-8v1_A-b37-Source.strand.zip
HumanOmni2.5-8v1_A-b38-Source.strand.zip
HumanOmni2.5-8v1-0-D
HumanOmni2-5-8-v1-0-D-b36-strand.zip
HumanOmni2-5-8-v1-0-D-b37-strand.zip
HumanOmni2-5-8-v1-0-D-b38-strand.zip
HumanOmni25-8v1-1_A
HumanOmni25-8v1-1_A-b36-strand.zip
HumanOmni25-8v1-1_A-b37-strand.zip
HumanOmni25-8v1-1_A-b38-strand.zip
HumanOmni2-5-8-v1-2-A
HumanOmni2-5-8-v1-2-A-b36-strand.zip
HumanOmni2-5-8-v1-2-A-b37-strand.zip
HumanOmni2-5-8-v1-2-A-b38-strand.zip
humanomni25m-8v1-1_b
humanomni25m-8v1-1_b-b36-strand.zip
humanomni25m-8v1-1_b-b37-strand.zip
humanomni25m-8v1-1_b-b38-strand.zip
HumanOmni2.5-8v1_C
HumanOmni2.5-8v1_C-b36-strand.zip
HumanOmni2.5-8v1_C-b37-strand.zip
HumanOmni2.5-8v1_C-b38-strand.zip
HumanOmni2.5-8v1-1-C
HumanOmni2-5-8-v1-1-C-b36-strand.zip
HumanOmni2-5-8-v1-1-C-b37-strand.zip
HumanOmni2-5-8-v1-1-C-b38-strand.zip
HumanOmni2.5S-8v1_B
HumanOmni2.5S-8v1_B-b36-strand.zip
HumanOmni2.5S-8v1_B-b37-strand.zip
HumanOmni2.5S-8v1_B-b38-strand.zip
HumanOmni25-8v1-2_A1
HumanOmni25-8v1-2_A1-b36-strand.zip
HumanOmni25-8v1-2_A1-b37-strand.zip
HumanOmni25-8v1-2_A1-b38-strand.zip
InfiniumOmni2-5-8v1-3_A1
InfiniumOmni2-5-8v1-3_A1-b36-strand.zip
InfiniumOmni2-5-8v1-3_A1-b37-strand.zip
InfiniumOmni2-5-8v1-3_A1-b38-strand.zip
InfiniumOmni2-5-8v1-4_A1
InfiniumOmni2-5-8v1-4_A1-b36-strand.zip
InfiniumOmni2-5-8v1-4_A1-b37-strand.zip
InfiniumOmni2-5-8v1-4_A1-b38-strand.zip
HumanOmni5-4v1_B
HumanOmni5-4v1_B-b36-strand.zip
HumanOmni5-4v1_B-b37-strand.zip
HumanOmni5-4v1_B-b38-strand.zip
humanomni5-4v1_c
HumanOmni5-4v1_C-b36-strand.zip
humanomni5-4v1_c-b37-strand.zip
HumanOmni5-4v1_C-b38-strand.zip
HumanOmni5-4-v1-0-D
HumanOmni5-4-v1-0-D-b36-strand.zip
HumanOmni5-4-v1-0-D-b37-strand.zip
HumanOmni5-4-v1-0-D-b38-strand.zip
HumanOmni5-4v1-1_A
HumanOmni5-4v1-1_A-b36-strand.zip
HumanOmni5-4v1-1_A-b37-strand.zip
HumanOmni5-4v1-1_A-b38-strand.zip
InfiniumOmni5-4v1-2_A1
InfiniumOmni5-4v1-2_A1-b36-strand.zip
InfiniumOmni5-4v1-2_A1-b37-strand.zip
InfiniumOmni5-4v1-2_A1-b38-strand.zip
HumanOmni5Exome-4v1_A
humanomni5exome-4v1_a-b36-strand.zip
HumanOmni5Exome-4v1_A-b37-strand.zip
humanomni5exome-4v1_a-b38-strand.zip
HumanOmni5Exome-4v1-1_A
HumanOmni5Exome-4v1-1_A-b36-strand.zip
HumanOmni5Exome-4v1-1_A-b37-strand.zip
HumanOmni5Exome-4v1-1_A-b38-strand.zip
Source Strand
HumanOmni5Exome-4v1-1_A-b36-Source.strand.zip
HumanOmni5Exome-4v1-1_A-b37-Source.strand.zip
HumanOmni5Exome-4v1-1_A-b38-Source.strand.zip
HumanOmni5Exome-4v1-1_B
HumanOmni5Exome-4v1-1_B-b37-strand.zip
HumanOmni5Exome-4v1-1_B-b38-strand.zip
HumanOmni5Exome-4v1-2_A
HumanOmni5Exome-4v1-2_A-b36-strand.zip
HumanOmni5Exome-4v1-2_A-b37-strand.zip
HumanOmni5Exome-4v1-2_A-b38-strand.zip
InfiniumOmni5Exome-4v1-3_A1
InfiniumOmni5Exome-4v1-3_A1-b36-strand.zip
InfiniumOmni5Exome-4v1-3_A1-b37-strand.zip
InfiniumOmni5Exome-4v1-3_A1-b38-strand.zip
HumanCytoSNP-12v1-0_D
HumanCytoSNP-12v1-0_D-b36-strand.zip
HumanCytoSNP-12v1-0_D-b37-strand.zip
HumanCytoSNP-12v1-0_D-b38-strand.zip
HumanCytoSNP-12v2.1-FFPE_G
HumanCytoSNP-12v2.1-FFPE_G-b36-strand.zip
HumanCytoSNP-12v2.1-FFPE_G-b37-strand.zip
HumanCytoSNP-12v2.1-FFPE_G-b38-strand.zip
HumanCytoSNP-12v2_H
humancytosnp-12v2_h-b36-strand.zip
humancytosnp-12v2_h-b37-strand.zip
humancytosnp-12v2_h-b38-strand.zip
HumanCytoSNP-12v2-1_H
humancytosnp-12v2-1_h-b36-strand.zip
humancytosnp-12v2-1_h-b37-strand.zip
humancytosnp-12v2-1_h-b38-strand.zip
HumanCytoSNP-12v2-1_H Source Strand Versions
humancytosnp-12v2-1_h-b36.source.zip
humancytosnp-12v2-1_h-b37.source.zip
humancytosnp-12v2-1_h-b38.source.zip
HumanCytoSNP-12v2-1_L
humancytosnp-12v2-1_l-b36-strand.zip
humancytosnp-12v2-1_l-b37-strand.zip
humancytosnp-12v2-1_l-b38-strand.zip
HumanCytoSNP-12v2-1_L Source Strand Versions
humancytosnp-12v2-1_l-b36.source.zip
humancytosnp-12v2-1_l-b37.source.zip
humancytosnp-12v2-1_l-b38.source.zip
cytosnp-850k_b
cytosnp-850k_b-b36-strand.zip
cytosnp-850k_b-b37-strand.zip
cytosnp-850k_b-b38-strand.zip
CytoSNP-850K_v1-1
CytoSNP-850K_v1-1_iScan_A1-b36-strand.zip
CytoSNP-850K_v1-1_iScan_A1-b37-strand.zip
CytoSNP-850K_v1-1_iScan_A1-b38-strand.zip
HumanCore-12v1-0_A
humancore-12v1-0_a-b36-strand.zip
humancore-12v1-0_a-b37-strand.zip
Updated Versions with INDEL alleles corrected
humancore-12v1-0_a-b36-strand-v2.zip
humancore-12v1-0_a-b37-strand-v2.zip
humancore-12v1-0_a-b38-strand-v2.zip
HumanCore-12-v1-0-B
HumanCore-12-v1-0-B-b36-strand.zip
HumanCore-12-v1-0-B-b37-strand.zip
HumanCore-12-v1-0-B-b38-strand.zip
HumanCore-24-v1-0_A
humancore-24-v1-0-manifest-file-a-b36-strand.zip
humancore-24-v1-0-manifest-file-a-b37-strand.zip
humancore-24-v1-0-manifest-file-a-b38-strand.zip
InfiniumCore-24v1-1_A1
InfiniumCore-24v1-1_A1-b36-strand.zip
InfiniumCore-24v1-1_A1-b37-strand.zip
InfiniumCore-24v1-1_A1-b38-strand.zip
InfiniumCore-24v1-2_A1
InfiniumCore-24v1-2_A1-b37-strand.zip
InfiniumCore-24v1-2_A1-b38-strand.zip
Immuno_BeadChip_11419691_B
Immuno_BeadChip_11419691_B-b36-strand.zip
Immuno_BeadChip_11419691_B-b37-strand.zip
Immuno_BeadChip_11419691_B-b38-strand.zip
InfiniumImmunoArray-24v2-0_A
InfiniumImmunoArray-24v2-0_A-b36-strand.zip
InfiniumImmunoArray-24v2-0_A-b37-strand.zip
InfiniumImmunoArray-24v2-0_A-b38-strand.zip
Multi-EthnicGlobal_A1
Multi-EthnicGlobal_A1-b36-strand.zip
Multi-EthnicGlobal_A1-b37-strand.zip
Multi-EthnicGlobal_A1-b38-strand.zip
Multi-EthnicGlobal_D1
Multi-EthnicGlobal_D1-b37-strand.zip
Multi-EthnicGlobal_D1-b38-strand.zip
Multi-EthnicEUR-EAS-SAS-8v1-0_A1
Multi-EthnicEUR-EAS-SAS-8v1-0_A1-b37-strand.zip
Multi-EthnicEUR-EAS-SAS-8v1-0_A1-b38-strand.zip
Multi-EthnicAMR-AFR-8v1-0_A1
Multi-EthnicAMR-AFR-8v1-0_A1-b37-strand.zip
Multi-EthnicAMR-AFR-8v1-0_A1-b38-strand.zip
HumanExome-12v1_A
HumanExome-12v1_A-b36-strand.zip
HumanExome-12v1_A-b37-strand.zip
HumanExome-12v1_A-b38-strand.zip
HumanExome-12v1_A AB to TOP alleles Mapping
HumanExome.A.update_alleles.txt.gz
Zip version for those with problems downloading the gzip version
above
HumanExome-12v1_A.update_alleles.txt.zip
HumanExome-12v1-1_A
HumanExome-12v1-1_A-b36-strand.zip
HumanExome-12v1-1_A-b37-strand.zip
HumanExome-12v1-1_A-b38-strand.zip
Source Strand versions
HumanExome-12v1-1_A-b36-SourceStrand.zip
HumanExome-12v1-1_A-b37-SourceStrand.zip
HumanExome-12v1-2_A
HumanExome-12v1-2_A-b36-strand.zip
HumanExome-12v1-2_A-b37-strand.zip
HumanExome-12v1-2_A-b38-strand.zip
InfiniumExome-24v1-1_A1
InfiniumExome-24v1-1_A1-b38-strand.zip
InfiniumExome-24v1-1_A1-b37-strand.zip
InfiniumExome-24v1-1_A1-b36-strand.zip
HumanCoreExome-12v1-0_B
HumanCoreExome-12v1-0_B-b36-strand.zip
HumanCoreExome-12v1-0_B-b37-strand.zip
HumanCoreExome-12v1-0_B-b38-strand.zip
ILLM Strand Version
HumanCoreExome-12v1-0_B-b37-ILLM.zip
HumanCoreExome-12v1-0_C
humancoreexome-12v1-0_c-b36-strand.zip
humancoreexome-12v1-0_c-b37-strand.zip
humancoreexome-12v1-0_c-b38-strand.zip
HumanCoreExome-12v1-0-D
HumanCoreExome-12-v1-0-D-b36-strand.zip
HumanCoreExome-12-v1-0-D-b37-strand.zip
HumanCoreExome-12-v1-0-D-b38-strand.zip
HumanCoreExome-12v1-1_A
humancoreexome-12v1-1_a-b36-strand.zip
humancoreexome-12v1-1_a-b37-strand.zip
humancoreexome-12v1-1_a-b38-strand.zip
HumanCoreExome-12v1-1_B
HumanCoreExome-12v1-1_B-b36-strand.zip
HumanCoreExome-12v1-1_B-b37-strand.zip
HumanCoreExome-12v1-1_B-b38-strand.zip
HumanCoreExome-12v1-1-C
HumanCoreExome-12-v1-1-C-b36-strand.zip
HumanCoreExome-12-v1-1-C-b37-strand.zip
HumanCoreExome-12-v1-1-C-b38-strand.zip
HumanCoreExome-24v1-0_A
HumanCoreExome-24v1-0_A-b36-strand.zip
HumanCoreExome-24v1-0_A-b37-strand.zip
HumanCoreExome-24v1-0_A-b38-strand.zip
InfiniumCoreExome-24v1-1_A
InfiniumCoreExome-24v1-1_A-b36-strand.zip
InfiniumCoreExome-24v1-1_A-b37-strand.zip
InfiniumCoreExome-24v1-1_A-b38-strand.zip
InfiniumCoreExome-24v1-2_A
InfiniumCoreExome-24v1-2_A1-b36-strand.zip
InfiniumCoreExome-24v1-2_A1-b37-strand.zip
InfiniumCoreExome-24v1-2_A1-b38-strand.zip
InfiniumCoreExome-24v1-3_A1
InfiniumCoreExome-24v1-3_A1-b36-strand.zip
InfiniumCoreExome-24v1-3_A1-b37-strand.zip
InfiniumCoreExome-24v1-3_A1-b38-strand.zip
Cardio-Metabo_Chip_11395247_A
Cardio-Metabo_Chip_11395247_A-b36-strand.zip
Cardio-Metabo_Chip_11395247_A-b37-strand.zip
Cardio-Metabo_Chip_11395247_A-b38-strand.zip
Original Cardio-Metabo_Chip_11395247_A files, for reference only
Metabochip-strand-b36-v5.zip
Metabochip-b37.58-v2.zip
Cardio-Metabo_Chip_11395247_A Source Strand version
Metabochip-b36-v5-SourceStrand.zip
Metabochip-b37-SourceStrand.zip
Cardio-Metabo_Chip_11395247_A Allele sets
Metabochip-alleles.zip
cardio-metabo_chip_11395247_C
cardio-metabo_chip_11395247_c-b36-strand.zip
cardio-metabo_chip_11395247_c-b37-strand.zip
cardio-metabo_chip_11395247_c-b38-strand.zip
CVDSNP55v1_A
CVDSNP55v1_A-b36-strand.zip
CVDSNP55v1_A-b37-strand.zip
CVDSNP55v1_A-b38-strand.zip
PsychArray_A
PsychArray_A-b36-strand.zip
PsychArray_A-b37-strand.zip
PsychArray_A-b38-strand.zip
PsychArray_B
PsychArray-B-b36-strand.zip
PsychArray-B-b37-strand.zip
PsychArray-B-b38-strand.zip
InfiniumPsychArray-24v1-1_A1
InfiniumPsychArray-24v1-1_A1-b36-strand.zip
InfiniumPsychArray-24v1-1_A1-b37-strand.zip
InfiniumPsychArray-24v1-1_A1-b38-strand.zip
InfiniumPsychArray-24v1-2_A1
InfiniumPsychArray-24v1-2_A1-b36-strand.zip
InfiniumPsychArray-24v1-2_A1-b37-strand.zip
InfiniumPsychArray-24v1-2_A1-b38-strand.zip
InfiniumPsychArray-24v1-2_A2
InfiniumPsychArray-24v1-2_A2-b36-strand.zip
InfiniumPsychArray-24v1-2_A2-b37-strand.zip
InfiniumPsychArray-24v1-2_A2-b38-strand.zip
InfiniumPsychArray-24v1-3_A1
InfiniumPsychArray-24v1-3_A1-b37-strand.zip
InfiniumPsychArray-24v1-3_A1-b38-strand.zip
PsychChip_15048346_B
PsychChip_15048346_B-b36-strand.zip
PsychChip_15048346_B-b37-strand.zip
PsychChip_15048346_B-b38-strand.zip
PsychChip_v1-1_15073391_A
PsychChip_v1-1_15073391_A1-b36-strand.zip
PsychChip_v1-1_15073391_A1-b37-strand.zip
PsychChip_v1-1_15073391_A1-b38-strand.zip
GDA-8v1-0_A1
GDA-8v1-0_A1-b37-strand.zip
GDA-8v1-0_A1-b38-strand.zip
GSAMD-24v1-0_20011747_A1
GSAMD-24v1-0_20011747_A1-b36-strand.zip
GSAMD-24v1-0_20011747_A1-b37-strand.zip
GSAMD-24v1-0_20011747_A1-b38-strand.zip
GSAMD-24v1-0_20011747_A2
GSAMD-24v1-0_20011747_A2-b37-strand.zip
GSAMD-24v1-0_20011747_A2-b38-strand.zip
GSAMD-24v1-0_20011747_A4
GSAMD-24v1-0_20011747_A4-b37-strand.zip
GSAMD-24v1-0_20011747_A4-b38-strand.zip
GSAMD-24v1-0_20011747_A5
GSAMD-24v1-0_20011747_A5-b37-strand.zip
GSAMD-24v1-0_20011747_A5-b38-strand.zip
GSAMD-24v2-0_20024620_A1
GSAMD-24v2-0_20024620_A1-b36-strand.zip
GSAMD-24v2-0_20024620_A1-b37-strand.zip
GSAMD-24v2-0_20024620_A1-b38-strand.zip
GSAMD-24v2-0_20024620_B1
GSAMD-24v2-0_20024620_B1-b37-strand.zip
GSAMD-24v2-0_20024620_B1-b38-strand.zip
GSA-24v1-0_A1
GSA-24v1-0_A1-b36-strand.zip
GSA-24v1-0_A1-b37-strand.zip
GSA-24v1-0_A1-b38-strand.zip
GSA-24v1-0_A2
GSA-24v1-0_A2-b36-strand.zip
GSA-24v1-0_A2-b37-strand.zip
GSA-24v1-0_A2-b38-strand.zip
GSA-24v1-0_A6
GSA-24v1-0_A6-b36-strand.zip
GSA-24v1-0_A6-b37-strand.zip
GSA-24v1-0_A6-b38-strand.zip
GSA-24v1-0_C1
GSA-24v1-0_C1-b37-strand.zip
GSA-24v1-0_C1-b38-strand.zip
GSA-24v2-0_A1
GSA-24v2-0_A1-b36-strand.zip
GSA-24v2-0_A1-b37-strand.zip
GSA-24v2-0_A1-b38-strand.zip
GSA-24v2-0_A2
GSA-24v2-0_A2-b37-strand.zip
GSA-24v2-0_A2-b38-strand.zip
GSA-24v3-0_A2
GSA-24v3-0_A2-b37-strand.zip
GSA-24v3-0_A2-b38-strand.zip
GSCA-24v1-0_20010441_A1
GSCA-24v1-0_20010441_A1-b36-strand.zip
GSCA-24v1-0_20010441_A1-b37-strand.zip
GSCA-24v1-0_20010441_A1-b38-strand.zip
GSCA-24v2-0_20023496_A1
GSCA-24v2-0_20023496_A1-b36-strand.zip
GSCA-24v2-0_20023496_A1-b37-strand.zip
GSCA-24v2-0_20023496_A1-b38-strand.zip
OncoArray-500K-B
OncoArray-500K_B-b36-strand.zip
OncoArray-500K_B-b37-strand.zip
OncoArray-500K_B-b38-strand.zip
OncoArray-500K-C
OncoArray-500K-C-b36-strand.zip
OncoArray-500K-C-b37-strand.zip
OncoArray-500K-C-b38-strand.zip
Consortium-OncoArray_15047405_A
Consortium-OncoArray_15047405_A-b36-strand.zip
Consortium-OncoArray_15047405_A-b37-strand.zip
Consortium-OncoArray_15047405_A-b38-strand.zip
NeuroX_15036164_A
NeuroX_15036164_A-b36-strand.zip
NeuroX_15036164_A-b37-strand.zip
NeuroX_15036164_A-b38-strand.zip
Affymetrix 500K (Nsp and Sty Chips)
Affy-NSP-STY-b37.58-v4.zip
Mapping250K_Nsp.na32.annot-b37-strand.zip
Mapping250K_Sty.na32.annot-b37-strand.zip
Mapping250K_Nsp.na32.annot-b38-strand.zip
Mapping250K_Sty.na32.annot-b38-strand.zip
Affymetrix SNP 5.0
GenomeWideSNP_5.na32.annot-b36-strand.zip
GenomeWideSNP_5.na32.annot-b37-strand.zip
GenomeWideSNP_5.na32.annot-b38-strand.zip
Affy 500K (Nsp and Sty Chips)
Nsp-Sty.na31-b37-strand.zip
Nsp-Sty.na30-b36-strand.zip
Affymetrix 6.0 (1M chip)
GenomeWideSNP_6.na30-b36-strand.zip
GenomewideSNP_6.na31-b37-strand.zip
GenomeWideSNP_6.na32-b37.strand.zip
50K_Xba240
50K_Xba240.na32.strand.zip