A/B allele mapping


These files are in plink format and allow the alleles in A/B format, from programs such as zCall, to be updated to the TOP alleles, allowing the use of the strand and position files to generate a data set on the genome build of choice.





BDCHP-1X10-HUMANHAP240S_11216501_A
BDCHP-1X10-HUMANHAP240S_11216501_A.update_alleles.txt.zip

BDCHP-1x10-HUMANHAP300v1-1_11219278_C
BDCHP-1x10-HUMANHAP300v1-1_11219278_C.update_alleles.txt.zip

BDCHP-1X10-HUMANHAP550_11218540_C
BDCHP-1X10-HUMANHAP550_11218540_C.update_alleles.txt.zip

Cardio-Metabo_Chip_11395247_A
Cardio-Metabo_Chip_11395247_A.update_alleles.txt.zip

cardio-metabo_chip_11395247_c
cardio-metabo_chip_11395247_c.update_alleles.txt.zip

Cardio-Metabo_Chip_Annotation
Cardio-Metabo_Chip_Annotation.update_alleles.txt.zip

CVDSNP55v1_A
CVDSNP55v1_A.update_alleles.txt.zip

GSA-24v1-0_A1
GSA-24v1-0_A1.update_alleles.txt.zip

GSA-24v1-0_A2
GSA-24v1-0_A2.update_alleles.txt.zip

GSA-24v1-0_A6
GSA-24v1-0_A6.update_alleles.txt.zip

GSA-24v1-0_C1
GSA-24v1-0_C1.update_alleles.txt.zip

GSA-24v2-0_A1
GSA-24v2-0_A1.update_alleles.txt.zip

GSAMD-24v1-0_20011747_A1
GSAMD-24v1-0_20011747_A1.update_alleles.txt.zip

GSAMD-24v2-0_20024620_A1
GSAMD-24v2-0_20024620_A1.update_alleles.txt.zip

GSCA-24v1-0_20010441_A1
GSCA-24v1-0_20010441_A1.update_alleles.txt.zip

GSCA-24v2-0_20023496_A1
GSCA-24v2-0_20023496_A1.update_alleles.txt.zip

Human1-2M-DuoCustom_v1_A
Human1-2M-DuoCustom_v1_A.update_alleles.txt.zip

Human1M-Duov3_B
Human1M-Duov3_B.update_alleles.txt.zip

Human1M-Duov3_C
Human1M-Duov3_C.update_alleles.txt.zip

human1m-duov3_h
human1m-duov3_h.update_alleles.txt.zip

Human1Mv1_C
Human1Mv1_C.update_alleles.txt.zip

Human610-Quadv1_B
Human610-Quadv1_B.update_alleles.txt.zip

human610-quadv1_h
human610-quadv1_h.update_alleles.txt.zip

Human660W-Quad_v1_A
Human660W-Quad_v1_A.update_alleles.txt.zip

Human660W-Quad_v1_C
Human660W-Quad_v1_C.update_alleles.txt.zip

human660w-quad_v1_h
human660w-quad_v1_h.update_alleles.txt.zip

Human670-QuadCustom_v1_A
Human670-QuadCustom_v1_A.update_alleles.txt.zip

HumanCNV370-Quadv3_C
HumanCNV370-Quadv3_C.update_alleles.txt.zip

HumanCNV370v1_C
HumanCNV370v1_C.update_alleles.txt.zip

HumanCore-12-v1-0-B
HumanCore-12-v1-0-B.update_alleles.txt.zip

humancore-12v1-0_a
humancore-12v1-0_a.update_alleles.txt.zip

humancore-24-v1-0-manifest-file-a
humancore-24-v1-0-manifest-file-a.update_alleles.txt.zip

HumanCoreExome-12-v1-0-D
HumanCoreExome-12-v1-0-D.update_alleles.txt.zip

HumanCoreExome-12-v1-1-C
HumanCoreExome-12-v1-1-C.update_alleles.txt.zip

HumanCoreExome-12v1-0_B
HumanCoreExome-12v1-0_B.update_alleles.txt.zip

humancoreexome-12v1-0_c
humancoreexome-12v1-0_c.update_alleles.txt.zip

humancoreexome-12v1-1_a
humancoreexome-12v1-1_a.update_alleles.txt.zip

HumanCoreExome-12v1-1_B
HumanCoreExome-12v1-1_B.update_alleles.txt.zip

HumanCoreExome-24v1-0_A
HumanCoreExome-24v1-0_A.update_alleles.txt.zip

HumanCytoSNP-12v1-0_D
HumanCytoSNP-12v1-0_D.update_alleles.txt.zip

humancytosnp-12v2-1_h
humancytosnp-12v2-1_h.update_alleles.txt.zip

humancytosnp-12v2-1_l
humancytosnp-12v2-1_l.update_alleles.txt.zip

HumanCytoSNP-12v2.1-FFPE_G
HumanCytoSNP-12v2.1-FFPE_G.update_alleles.txt.zip

humancytosnp-12v2_h
humancytosnp-12v2_h.update_alleles.txt.zip

HumanExome-12v1-1_A
HumanExome-12v1-1_A.update_alleles.txt.zip

HumanExome-12v1-2_A
HumanExome-12v1-2_A.update_alleles.txt.zip

HumanExome-12v1-2_A
HumanExome-12v1-2_A.update_alleles.zip

HumanExome-12v1_A
HumanExome-12v1_A.update_alleles.txt.zip

HumanExome.A
HumanExome.A.update_alleles.txt.zip

HumanHap300v2_A
HumanHap300v2_A.update_alleles.txt.zip

HumanHap550-2v3_B
HumanHap550-2v3_B.update_alleles.txt.zip

HumanHap550v3_A
HumanHap550v3_A.update_alleles.txt.zip

HumanHap650Yv3_A
HumanHap650Yv3_A.update_alleles.txt.zip

humanomni1-quad_v1-0-multi_h
humanomni1-quad_v1-0-multi_h.update_alleles.txt.zip

HumanOmni1-Quad_v1-0_B
HumanOmni1-Quad_v1-0_B.update_alleles.txt.zip

HumanOmni1-Quad_v1-0_C
HumanOmni1-Quad_v1-0_C.update_alleles.txt.zip

HumanOmni1-Quad_v1-0_H
HumanOmni1-Quad_v1-0_H.update_alleles.txt.zip

HumanOmni1S-8v1_H
HumanOmni1S-8v1_H.update_alleles.txt.zip

HumanOmni2-5-8-v1-0-D
HumanOmni2-5-8-v1-0-D.update_alleles.txt.zip

HumanOmni2-5-8-v1-1-C
HumanOmni2-5-8-v1-1-C.update_alleles.txt.zip

HumanOmni2-5-8-v1-2-A
HumanOmni2-5-8-v1-2-A.update_alleles.txt.zip

HumanOmni2-5Exome-8-v1-1-A
HumanOmni2-5Exome-8-v1-1-A.update_alleles.txt.zip

HumanOmni2.5-4v1_B
HumanOmni2.5-4v1_B.update_alleles.txt.zip

HumanOmni2.5-4v1_D
HumanOmni2.5-4v1_D.update_alleles.txt.zip

HumanOmni2.5-4v1_H
HumanOmni2.5-4v1_H.update_alleles.txt.zip

HumanOmni2.5-8v1_A
HumanOmni2.5-8v1_A.update_alleles.txt.zip

HumanOmni2.5-8v1_C
HumanOmni2.5-8v1_C.update_alleles.txt.zip

HumanOmni2.5S-8v1_B
HumanOmni2.5S-8v1_B.update_alleles.txt.zip

HumanOmni25-8v1-1_A
HumanOmni25-8v1-1_A.update_alleles.txt.zip

HumanOmni25-8v1-2_A1
HumanOmni25-8v1-2_A1.update_alleles.txt.zip

HumanOmni25Exome-8v1_A
HumanOmni25Exome-8v1_A.update_alleles.txt.zip

humanomni25m-8v1-1_b
humanomni25m-8v1-1_b.update_alleles.txt.zip

HumanOmni5-4-v1-0-D
HumanOmni5-4-v1-0-D.update_alleles.txt.zip

HumanOmni5-4v1-1_A
HumanOmni5-4v1-1_A.update_alleles.txt.zip

HumanOmni5-4v1_B
HumanOmni5-4v1_B.update_alleles.txt.zip

HumanOmni5-4v1_C
HumanOmni5-4v1_C.update_alleles.txt.zip

HumanOmni5Exome-4v1-1_A
HumanOmni5Exome-4v1-1_A.update_alleles.txt.zip

HumanOmni5Exome-4v1-2_A
HumanOmni5Exome-4v1-2_A.update_alleles.txt.zip

HumanOmni5Exome-4v1_A
HumanOmni5Exome-4v1_A.update_alleles.txt.zip

HumanOmniExpress-12v1-1_A
HumanOmniExpress-12v1-1_A.update_alleles.txt.zip

HumanOmniExpress-12v1-1_B
HumanOmniExpress-12v1-1_B.update_alleles.txt.zip

HumanOmniExpress-12v1-Multi_B
HumanOmniExpress-12v1-Multi_B.update_alleles.txt.zip

HumanOmniExpress-12v1-Multi_C
HumanOmniExpress-12v1-Multi_C.update_alleles.txt.zip

HumanOmniExpress-12v1_A
HumanOmniExpress-12v1_A.update_alleles.txt.zip

HumanOmniExpress-12v1_H
HumanOmniExpress-12v1_H.update_alleles.txt.zip

HumanOmniExpress-12v1_J
HumanOmniExpress-12v1_J.update_alleles.txt.zip

humanomniexpress-12v1_j_ffpe
humanomniexpress-12v1_j_ffpe.update_alleles.txt.zip

HumanOmniExpress-24-v1-0-B
HumanOmniExpress-24-v1-0-B.update_alleles.txt.zip

humanomniexpress-24-v1-1-a
humanomniexpress-24-v1-1-a.update_alleles.txt.zip

humanomniexpress-24v1-0_a
humanomniexpress-24v1-0_a.update_alleles.txt.zip

HumanOmniExpressExome-8-v1-0-B
HumanOmniExpressExome-8-v1-0-B.update_alleles.txt.zip

HumanOmniExpressExome-8-v1-1-C
HumanOmniExpressExome-8-v1-1-C.update_alleles.txt.zip

HumanOmniExpressExome-8-v1-2-B
HumanOmniExpressExome-8-v1-2-B.update_alleles.txt.zip

humanomniexpressexome-8v1-0_a
humanomniexpressexome-8v1-0_a.update_alleles.txt.zip

HumanOmniExpressExome-8v1-2_A
HumanOmniExpressExome-8v1-2_A.update_alleles.txt.zip

HumanOmniExpressExome-8v1_A
HumanOmniExpressExome-8v1_A.update_alleles.txt.zip

HumanOmniExpressExome-8v1_A
HumanOmniExpressExome-8v1_A.update_alleles.zip

humanomniexpressexome8v12a
humanomniexpressexome8v12a.update_alleles.txt.zip

humanomnizhonghua-8v1-1_a
humanomnizhonghua-8v1-1_a.update_alleles.txt.zip

HumanOmniZhongHua-8v1-2_A
HumanOmniZhongHua-8v1-2_A.update_alleles.txt.zip

HumanOmniZhongHua-8v1_B
HumanOmniZhongHua-8v1_B.update_alleles.txt.zip

Immuno_BeadChip_11419691_B
Immuno_BeadChip_11419691_B.update_alleles.txt.zip

InfiniumCore-24v1-1_A1
InfiniumCore-24v1-1_A1.update_alleles.txt.zip

InfiniumCore-24v1-2_A1
InfiniumCore-24v1-2_A1.update_alleles.txt.zip

InfiniumCoreExome-24v1-1_A
InfiniumCoreExome-24v1-1_A.update_alleles.txt.zip

InfiniumCoreExome-24v1-2_A1
InfiniumCoreExome-24v1-2_A1.update_alleles.txt.zip

InfiniumCoreExome-24v1-3_A1
InfiniumCoreExome-24v1-3_A1.update_alleles.txt.zip

InfiniumExome-24v1-0_A1
InfiniumExome-24v1-0_A1.update_alleles.txt.zip

InfiniumExome-24v1-1_A1
InfiniumExome-24v1-1_A1.update_alleles.txt.zip

InfiniumImmunoArray-24v2-0_A
InfiniumImmunoArray-24v2-0_A.update_alleles.txt.zip

InfiniumImmunoArray-24v2-0_A2
InfiniumImmunoArray-24v2-0_A2.update_alleles.txt.zip

InfiniumOmni2-5-8v1-3_A1
InfiniumOmni2-5-8v1-3_A1.update_alleles.txt.zip

InfiniumOmni2-5-8v1-3_A2
InfiniumOmni2-5-8v1-3_A2.update_alleles.txt.zip

InfiniumOmni2-5-8v1-4_A1
InfiniumOmni2-5-8v1-4_A1.update_alleles.txt.zip

InfiniumOmni2-5Exome-8v1-3_A1
InfiniumOmni2-5Exome-8v1-3_A1.update_alleles.txt.zip

InfiniumOmni2-5Exome-8v1-3_A2
InfiniumOmni2-5Exome-8v1-3_A2.update_alleles.txt.zip

InfiniumOmni2-5Exome-8v1-4_A1
InfiniumOmni2-5Exome-8v1-4_A1.update_alleles.txt.zip

InfiniumOmni2.5Exome-8v1-2_A
InfiniumOmni2.5Exome-8v1-2_A.update_alleles.txt.zip

InfiniumOmni5-4v1-2_A1
InfiniumOmni5-4v1-2_A1.update_alleles.txt.zip

InfiniumOmni5-4v1-2_A2
InfiniumOmni5-4v1-2_A2.update_alleles.txt.zip

InfiniumOmni5Exome-4v1-3_A1
InfiniumOmni5Exome-4v1-3_A1.update_alleles.txt.zip

InfiniumOmni5Exome-4v1-3_A2
InfiniumOmni5Exome-4v1-3_A2.update_alleles.txt.zip

InfiniumOmniExpress-24v1-2_A1
InfiniumOmniExpress-24v1-2_A1.update_alleles.txt.zip

InfiniumOmniExpress-24v1-2_A2
InfiniumOmniExpress-24v1-2_A2.update_alleles.txt.zip

InfiniumOmniExpressExome-8v1-3_A
InfiniumOmniExpressExome-8v1-3_A.update_alleles.txt.zip

InfiniumOmniExpressExome-8v1-4_A1
InfiniumOmniExpressExome-8v1-4_A1.update_alleles.txt.zip

InfiniumOmniExpressExome-8v1-4_A2
InfiniumOmniExpressExome-8v1-4_A2.update_alleles.txt.zip

InfiniumOmniZhongHua-8v1-3_A1
InfiniumOmniZhongHua-8v1-3_A1.update_alleles.txt.zip

InfiniumOmniZhongHua-8v1-3_A2
InfiniumOmniZhongHua-8v1-3_A2.update_alleles.txt.zip

InfiniumPsychArray-24v1-1_A1
InfiniumPsychArray-24v1-1_A1.update_alleles.txt.zip

InfiniumPsychArray-24v1-1_A2
InfiniumPsychArray-24v1-1_A2.update_alleles.txt.zip

InfiniumPsychArray-24v1-2_A1
InfiniumPsychArray-24v1-2_A1.update_alleles.txt.zip

InfiniumPsychArray-24v1-2_A2
InfiniumPsychArray-24v1-2_A2.update_alleles.txt.zip

InfiniumQCArray-24v1-0_A3
InfiniumQCArray-24v1-0_A3.update_alleles.txt.zip

InfiniumQCArray-24v1-0_A4
InfiniumQCArray-24v1-0_A4.update_alleles.txt.zip

MEGA_Consortium_1
MEGA_Consortium_1.update_alleles.txt.zip

MEGA_Consortium_15063755_B2
MEGA_Consortium_15063755_B2.update_alleles.txt.zip

MEGA_Consortium_2
MEGA_Consortium_2.update_alleles.txt.zip

MEGA_Consortium_3
MEGA_Consortium_3.update_alleles.txt.zip

MEGA_Consortium_4
MEGA_Consortium_4.update_alleles.txt.zip

MEGA_Consortium_v2_15070954_A1
MEGA_Consortium_v2_15070954_A1.update_alleles.txt.zip

MEGA_Consortium_v2_15070954_A2
MEGA_Consortium_v2_15070954_A2.update_alleles.txt.zip

MS_Replication_Chip_15037643_A
MS_Replication_Chip_15037643_A.update_alleles.txt.zip

Multi-EthnicGlobal_A1
Multi-EthnicGlobal_A1.update_alleles.txt.zip

NeuroX_15036164_A
NeuroX_15036164_A.update_alleles.txt.zip

OmniExpressExome-8v1-1_A
OmniExpressExome-8v1-1_A.update_alleles.txt.zip

OmniExpressExome-8v1-1_B
OmniExpressExome-8v1-1_B.update_alleles.txt.zip

OncoArray-500K-C
OncoArray-500K-C.update_alleles.txt.zip

OncoArray-500K_B
OncoArray-500K_B.update_alleles.txt.zip

PsychArray-B
PsychArray-B.update_alleles.txt.zip

PsychArray_A
PsychArray_A.update_alleles.txt.zip

PsychChip_15048346_B
PsychChip_15048346_B.update_alleles.txt.zip

PsychChip_v1-1_15073391_A1
PsychChip_v1-1_15073391_A1.update_alleles.txt.zip

QCArray_20003085_4
QCArray_20003085_4.update_alleles.txt.zip