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Publications

Single cell spatial analysis reveals inflammatory foci of immature neutrophil and CD8 T cells in COVID-19 lungs.

Weeratunga P. et al, (2023), Nature communications, 14

Systematic analysis of YFP traps reveals common mRNA/protein discordance in neural tissues.

Titlow JS. et al, (2023), J Cell Biol, 222

Fusion of colour contrasted images for early detection of oesophageal squamous cell dysplasia from endoscopic videos in real time

Gao XW. et al, (2023), Information Fusion, 92, 64 - 79

Breathlessness in a virtual world: An experimental paradigm testing how discrepancy between VR visual gradients and pedal resistance during stationary cycling affects breathlessness perception.

Finnegan SL. et al, (2023), PloS one, 18

LanceOtron: a deep learning peak caller for genome sequencing experiments

Hentges LD. et al, (2022), Bioinformatics, 38, 4255 - 4263

Mental health needs of adolescents with HIV in Africa - Authors' reply.

Gooden TE. et al, (2022), The lancet. HIV, 9, e376 - e377

The chromatin remodeller ATRX facilitates diverse nuclear processes, in a stochastic manner, in both heterochromatin and euchromatin.

Truch J. et al, (2022), Nature communications, 13

Bioinformatics and the Metaverse: Are We Ready?

Taylor S. and Soneji S., (2022), Frontiers in Bioinformatics, 2

A blood atlas of COVID-19 defines hallmarks of disease severity and specificity

Ahern DJ. et al, (2022), Cell, 185, 916 - 938.e58

A matched cohort study investigating premature, accentuated, and accelerated aging in people living with HIV

Gooden TE. et al, (2022), HIV Medicine

Early detection of oesophageal cancer through colour contrast enhancement for data augmentation

Gao X. et al, (2022), MEDICAL IMAGING 2022: COMPUTER-AIDED DIAGNOSIS, 12033

Integration of single-cell RNA-Seq and CyTOF data characterises heterogeneity of rare cell subpopulations

Repapi E. et al, (2022), F1000Research, 11

COMPUTATIONAL COLOUR CONTRAST-ENHANCEMENT IMPROVES ENDOSCOPIC VISIBILITY OF OESOPHAGEAL SQUAMOUS DYSPLASIA AND DETECTION IN AI-BASED SYSTEM

Gao X. et al, (2021), GUT, 70, A138 - A139

Defining genome architecture at base-pair resolution

Hua P. et al, (2021), Nature, 595, 125 - 129

Multi Locus View: an extensible web-based tool for the analysis of genomic data.

Sergeant MJ. et al, (2021), Communications Biology, 4

CSynth: an interactive modelling and visualization tool for 3D chromatin structure

Todd S. et al, (2021), Bioinformatics, 37, 951 - 955

A blood atlas of COVID-19 defines hallmarks of disease severity and specificity

Ahern DJ. et al, (2021)

Chromatin accessibility governs the differential response of cancer and T cells to arginine starvation

Crump NT. et al, (2021), Cell Reports, 35, 109101 - 109101

Multi-Modal Characterization of Monocytes in Idiopathic Pulmonary Fibrosis Reveals a Primed Type I Interferon Immune Phenotype

Fraser E. et al, (2021), Frontiers in Immunology, 12

LanceOtron: a deep learning peak caller for ATAC-seq, ChIP-seq, and DNase-seq

Hentges LD. et al, (2021)

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