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Publications

Targeted metagenomics reveals association between severity and pathogen co-detection in infants with respiratory syncytial virus

Lin G-L. et al, (2024), Nature Communications, 15

Prevalence of persistent SARS-CoV-2 in a large community surveillance study

Ghafari M. et al, (2024), Nature, 626, 1094 - 1101

Risk of SARS-CoV-2 reinfection during multiple Omicron variant waves in the UK general population.

Wei J. et al, (2024), Nature communications, 15

Demographics of sources of HIV-1 transmission in Zambia: a molecular epidemiology analysis in the HPTN 071 PopART study.

Hall M. et al, (2023), The Lancet. Microbe

Longitudinal population-level HIV epidemiologic and genomic surveillance highlights growing gender disparity of HIV transmission in Uganda.

Monod M. et al, (2023), Nature microbiology

Phylogenetic Analysis of Hepatitis C Virus Infections in a Large Belgian Cohort Using Next-Generation Sequencing of Full-Length Genomes.

Christensen KT. et al, (2023), Viruses, 15

Validation of an HIV whole genome sequencing method for HIV drug resistance testing in an Australian clinical microbiology laboratory

Jenkins F. et al, (2023), Journal of Medical Virology, 95

Lineage replacement and evolution captured by 3 years of the United Kingdom Coronavirus (COVID-19) Infection Survey

Lythgoe KA. et al, (2023), Proceedings of the Royal Society B: Biological Sciences, 290

Correction: Viral burden is associated with age, vaccination, and viral variant in a population-representative study of SARS-CoV-2 that accounts for time-since-infection-related sampling bias

Fryer HR. et al, (2023), PLOS Pathogens, 19, e1011706 - e1011706

Viral burden is associated with age, vaccination, and viral variant in a population-representative study of SARS-CoV-2 that accounts for time-since-infection-related sampling bias

Fryer HR. et al, (2023), PLOS Pathogens, 19, e1011461 - e1011461

Limited emergence of resistance to integrase strand transfer inhibitors (INSTIs) in ART-experienced participants failing dolutegravir-based antiretroviral therapy: a cross-sectional analysis of a Northeast Nigerian cohort

Abdullahi A. et al, (2023), Journal of Antimicrobial Chemotherapy, 78, 2000 - 2007

Protection against SARS-CoV-2 Omicron BA.4/5 variant following booster vaccination or breakthrough infection in the UK

Wei J. et al, (2023), Nature Communications, 14

COVID-19 vaccination, risk-compensatory behaviours, and contacts in the UK.

Buckell J. et al, (2023), Scientific reports, 13

Investigation of hospital discharge cases and SARS-CoV-2 introduction into Lothian care homes

Cotton S. et al, (2023), Journal of Hospital Infection, 135, 28 - 36

COVID-19 due to the B.1.617.2 (Delta) variant compared to B.1.1.7 (Alpha) variant of SARS-CoV-2: a prospective observational cohort study

Kläser K. et al, (2022), Scientific Reports, 12

Genomic assessment of quarantine measures to prevent SARS-CoV-2 importation and transmission

Aggarwal D. et al, (2022), Nature Communications, 13

Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning

Nickbakhsh S. et al, (2022), Scientific Reports, 12

The mutational spectrum of SARS-CoV-2 genomic and antigenomic RNA

Zhao L. et al, (2022), Proceedings of the Royal Society B: Biological Sciences, 289

Publisher Correction: SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway.

Willett BJ. et al, (2022), Nature microbiology, 7

Full-genome next-generation sequencing of hepatitis C virus to assess the accuracy of genotyping by the commercial assay LiPA and the prevalence of resistance-associated substitutions in a Belgian cohort.

Christensen KT. et al, (2022), Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology, 155

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