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Publications

Digital measurement of SARS-CoV-2 transmission risk from 7 million contacts.

Ferretti L. et al, (2023), Nature

Uptake of medical male circumcision with household-based testing, and the association of traditional male circumcision and HIV infection

Zewdie K. et al, (2023), AIDS, 37, 795 - 802

Frequency matters: comparison of drug resistance mutation detection by Sanger and next-generation sequencing in HIV-1

Balakrishna S. et al, (2023), Journal of Antimicrobial Chemotherapy, 78, 656 - 664

How to avoid a local epidemic becoming a global pandemic.

Stenseth NC. et al, (2023), Proceedings of the National Academy of Sciences of the United States of America, 120

Epidemiological impacts of the NHS COVID-19 app in England and Wales throughout its first year.

Kendall M. et al, (2023), Nat Commun, 14

Viral burdens are associated with age and viral variant in a population-representative study of SARS-CoV-2 that accounts for time-since-infection related sampling bias

Fryer HR. et al, (2022)

Large-scale calibration and simulation of COVID-19 epidemiologic scenarios to support healthcare planning.

Groves-Kirkby N. et al, (2022), Epidemics, 42

The mutational spectrum of SARS-CoV-2 genomic and antigenomic RNA

Zhao L. et al, (2022), Proceedings of the Royal Society B: Biological Sciences, 289

Slowly declining growth rates and dynamic reporting delays characterise the Monkeypox epidemic in the UK over May-August 2022

Panovska-Griffiths J. et al, (2022)

Projected outcomes of universal testing and treatment in a generalised HIV epidemic in Zambia and South Africa (the HPTN 071 [PopART] trial): a modelling study.

Probert WJM. et al, (2022), The lancet. HIV, 9, e771 - e780

Epidemiological dynamics of bacteriocin competition and antibiotic resistance.

Lehtinen S. et al, (2022), Proceedings. Biological sciences, 289

Estimating SARS-CoV-2 variant fitness and the impact of interventions in England using statistical and geo-spatial agent-based models.

Hinch R. et al, (2022), Philosophical transactions. Series A, Mathematical, physical, and engineering sciences, 380

Publisher Correction: SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway.

Willett BJ. et al, (2022), Nature microbiology, 7

Statistical and agent-based modelling of the transmissibility of different SARS-CoV-2 variants in England and impact of different interventions.

Panovska-Griffiths J. et al, (2022), Philosophical transactions. Series A, Mathematical, physical, and engineering sciences, 380

EpiBeds: Data informed modelling of the COVID-19 hospital burden in England

Overton CE. et al, (2022), PLOS Computational Biology, 18, e1010406 - e1010406

Estimating the potential to prevent locally acquired HIV infections in a UNAIDS Fast-Track City, Amsterdam

Blenkinsop A. et al, (2022), eLife, 11

A rapid, integrated method to monitor HIV viral load, drug resistance, and transmission patterns from finger-prick blood samples

Chaudron SE. et al, (2022), JOURNAL OF THE INTERNATIONAL AIDS SOCIETY, 25, 19 - 20

HIV drug resistance in a community‐randomized trial of universal testing and treatment: HPTN 071 (PopART)

Fogel JM. et al, (2022), Journal of the International AIDS Society, 25

Deep-sequence phylogenetics to quantify patterns of HIV transmission in the context of a universal testing and treatment trial – BCPP/Ya Tsie trial

Magosi LE. et al, (2022), eLife, 11

A highly virulent variant of HIV-1 circulating in the Netherlands.

Wymant C. et al, (2022), Science, 375, 540 - 545

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