I qualified as a doctor in 2004 and have since been working on a variety of projects related to the clinical and molecular epidemiology of infectious diseases. I am currently undertaking a DPhil jointly supervised by Prof Donnelly focused on using whole genome sequencing to explore the evolution and global dispersal of particular antibiotic resistance mechanisms in gram-negative pathogens of major clinical importance, including Escherichia coli and Klebsiella pneumoniae.
My current research interests include pathogen genomics, antimicrobial resistance, plasmid biology, molecular epidemiology, and the epidemiology of infectious diseases in general.
Stoesser N, Batty EM, Eyre DW et al. Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data. J Antimicrob Chemother. 2013 Oct;68(10):2234-44.
Chheng K, Carter MJ, Emary K, Chanpheaktra N, Moore CE, Stoesser N et al. A prospective study of the causes of febrile illness requiring hospitalisation in children in Cambodia. PLoS One. 2013 Apr 9;8(4):e60634.
Stoesser N, Moore CE, Pocock JM, An KP, Emary K, Carter MJ et al. Pediatric bloodstream infections in Cambodia, 2007-2011. Pediatr Infect Dis J. 2013 Jul;32(7):e272-6.
Stoesser N, Emary K, Soklin S, Peng An K, Sophal S et al. The value of intermittent point-prevalence surveys of healthcare-associated infections for evaluating infection control interventions at Angkor Hospital for Children, Siem Reap, Cambodia. Trans R Soc Trop Med Hyg. 2013 Apr;107(4):248-53.
Emary K, Moore CE, Chanpheaktra N, An KP, Chheng K, Sona S et al. Enteric fever in Cambodian children is dominated by multidrug-resistant H58 Salmonella enterica serovar Typhi with intermediate susceptibility to ciprofloxacin. Trans R Soc Trop Med Hyg. 2012 Dec;106(12):718-24.
Stoesser N, Pocock J, Moore CE, Soeng S, Hor P et al. The epidemiology of pediatric bone and joint infections in Cambodia, 2007-11. J Trop Pediatr. 2013 Feb;59(1):36-42. doi: 10.1093/tropej/fms044. Epub 2012 Sep 13.
Crook DW, Walker AS, Kean Y, Weiss K, Cornely OA et al. Fidaxomicin versus vancomycin for Clostridium difficile infection: meta-analysis of pivotal randomized controlled trials. Clin Infect Dis. 2012 Aug;55 Suppl 2:S93-103.
Differential occupational risks to healthcare workers from SARS-CoV-2 observed during a prospective observational study.
Eyre DW. et al, (2020), eLife, 9
Genomic surveillance of Escherichia coli and Klebsiella spp. in hospital sink drains and patients.
Constantinides B. et al, (2020), Microbial genomics
Reconciling the potentially irreconcilable? Genotypic and phenotypic amoxicillin-clavulanate resistance in Escherichia coli.
Davies TJ. et al, (2020), Antimicrobial agents and chemotherapy
Optimised use of Oxford Nanopore Flowcells for Hybrid Assemblies
Lipworth S. et al, (2020)
Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines
Bush SJ. et al, (2020), GigaScience, 9