Software

Platypus

Platypus is a tool designed for efficient and accurate variant detection in high-throughput sequencing data. Developed by: Dr Andrew Rimmer, Iain Mathieson, Dr Gerton Lunter.

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Stampy

Stampy is a powerful tool designed for ultra-sensitive and specific mapping of short read sequences onto a reference genome. Developed by: Dr Gerton Lunter.

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GREVE

The Genomic Recurrent Event ViEwer (GREVE) software tool creates genome-wide or per chromosome plots and summaries of a user-generated list of events, typically Copy Number Variations (CNVs), and genes. Developed by: Dr Jean-Baptiste Cazier.

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HAPPY

HAPPY is designed to map Quantitative Trait Loci (QTL) in outbred populations descended from crosses between inbred lines. Developed by: Prof Richard Mott.

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BrowseVCF

BrowseVCF is a web-based application and workflow to quickly prioritise disease-causative variants in VCF files. Developed by: Dr Silvia Salatino and Dr Varun Ramraj.

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Opossum

Opossum is a tool to pre-process RNA-seq reads prior to variant calling. Developed by: Dr Laura Oikkonen and Dr Stefano Lise.

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