The Wellcome Trust Centre for Human Genetics

Rat Mapping Resources

Maps      Markers      Congenics      Gene variants      Other Resources      Links

Maps

  • SNP-based genetic maps of the Rat (Nature Genetics 40:560 - 566, 2008)

  • Integration of Rat Linkage Maps in the Rat and Mouse Genomic Sequences (Genome Res. 14:758-65, 2004)

  • Integrated Radiation Hybrid/Consensus Linkage/Gene map(Genomics 75:57-69, 2001)


  • Rat Radiation Hybrid Maps (Nature Genetics 22: 27-36,1999)


  • Oxford Rat Genetic Map 1997 (Genome Research 7: 434-440, May1997)


  • Comparative Mapping
    • 1-Radiation Hybrid Maps (Nature Genetics 22: 27-36, May1999) 2-Linkage Maps (Mammaliam Genome 10: 675-686,1999) 3-Detailed Gene Map of Rat Chromosome 1 (Genomics 64: 32-43, 2000) 4-Detailed Gene Map of Modpkdr1 locus on Rat Chromosome 8 (Human Molecular Genetics 11: 2165-73, 2002)

    Markers

    Marker Information
  • SNPs
  • SSLPs, others


    • Polymorphism data
  • SNPs
  • SSLPs


    • Congenics

  • BN.GK-Nidd/gk1 (rat chromosome 1)(Mamm Genome 17:538-547, 2006)

  • BN.GK-Nidd/gk2 (rat chromosome 2)(Physiol Genomics 19:1-10, 2004)

  • BN.GK-Nidd/gk5 (rat chromosome 8)(Diabetologia 47:1096-1106, 2004)


    • Sequence variations in disease candidate genes

  • Functional SNPs in inbred rat strains

  • Genomic organization of the rat Clock gene and sequence analysis in inbred rat strains (Genomics 87(2): 208-217, 2006)

  • A missense mutation in the sterile alpha-motif of the novel protein SamCystin is associated with polycystic kidney disease in the (cy/+) rat (JASN 16(12): 3517-3526, 2005)

  • Type II SH2 domain-containing inositol 5-phosphatase (INPPL1, or SHIP2) (Diabetes. 53: 1900-1904, 2004)

  • Rat seipin gene (Bscl2) (Cytogenet. Genome Res. 98: 71-74, 2002)


    • Other Resources

  • YAC libraries

    • High density spotted filters of the rat YAC libraries are available through the Resource Center / Primary Database, German Human Genome Project, Max-Plank-Institute fur Molekulare Genetick, Berlin , Germany

    Reference: Li Cai et al. Construction and Characterization of a 10-Genome Equivalent Yeast Artificial Chromosome Library for the Laboratory Rat, Rattus norvegicus. Genomics 39:385-392 (1997).

  • Catalogue of YAC clones

    • An anchored YAC-STS framework for the rat genome (Cytogenetics and Cell Genetics 89:3-4:168-170, Sept 2000)

    Reference: L. Cai et al. An anchored YAC-STS framework for the rat genome. Cytogenetics and Cell Genetics 89(3-4):168-170 (2000)
    M-T Bihoreau, PhD

  • PAC libraries

    • The rat PAC library or individual clone and high-density filters are currently available to the public through:
    1- BACPAC Resources Center (BPRC), Pieter de Jongs Laboratory, Children's Hospital Oakland Research Institute in Oakland, California, USA
    2- Resource Centre/Primary Database, German Human Genome Project, Max-Plank-Institute fur Molekulare Genetick, Berlin , Germany

    Reference: Peng Yeong Woon et al. Construction and Characterization of a 10-fold Genome Equivalent Rat P1-derived Artificial Chromosome Library. Genomics 50: 306-316 (1998)
    Peng Yeong Woon, PhD

  • BAC libraries

    • The rat BAC library or individual clone and high-density filters are currently available to the public through:
    1- BACPAC Resources Center (BPRC), Pieter de Jongs Laboratory, Children's Hospital Oakland Research Institute in Oakland, California, USA

    Links


    Ensembl
    UCSC Genome Bioinformatics
    Rat Genome Resourses
    The Rat Genome database RGD
    The Rat Genome database RATMAP
    The Whitehead Institute for Biomedical Research/MIT Center for Genome Research
    The Otsuka GEN Research Institute
    UIowa Rat EST Project
    Radiation Hybrid Database

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