Computing hardware

Tool Development

The analysis of high-throughput genomics data presents many challenges for data analysis.  While for many tasks there are high quality tools available, in other areas we have developed tools to increase the accuracy of analysis or to provide a wider range of analysis options. 

Methods developed by members of the BSG team have been widely used in other centres and in international projects including the 1000 Genomes Project.

Sequencing Analysis 

 Statistical Genetics

Arrays Analysis

 

cortex_logo

Cortex

 Genome Assembly

 Variant Discovery

 Genotyping Analysis

                  

ChromoPainter

 ChromoPainter

 Haplotypes Visualization

 Population Structure

 

                   

OncoSNP-Arrays

 OncoSNP

 Copy Number Alterations

 Loss-of-Heterozygosity

                   

Platypus Software

Platypus

 Variant Detection

 

GREVE

 GREVE

 Chromosome/Genome

 Event Viewer

 

QuantiSNP_logo

 QuantiSNP

 Copy Number Variation

 

Stampy

Stampy

 Short Reads Mapping

 

GWAMA

 GWAMA

 Genome-Wide Association

 Meta Analysis

 

   

 

All tools  

VCFTools

VCFtools

 VCF files manager

 

HAPPY

 HAPPY

 QTL Mapping

     
         

LDhat

 LDhat

 Linkage Disequilibrium

 Recombination Rates

     
   

Marchini Software

 Marchini

 Genome-Wide Association Studies