Illumina IScan

The IScan offers high sensitivity and throughput capacity. In combination with the Iscan autoloader and the Robot - LIHA (TECAN) our experienced team can process up to 1152 samples per week.

Illumina iScan

Assays and Data Output*:

 

Illumina GoldenGate

This includes QC of the project, editing of clusters, SNP calling and the genotypes for each assay in each sample. A Final report for the project will be generated using Illumina Genome studio software and sent along with the raw data files. In addition, the Project Summary report will highlights poor assays and the call frequencies of any poor results.

Illumina Infinium

As standard you will be provided with a Final report generated using Illumina Genome studio software, a DNA report and a Project Summary Report with QC Report. These cover all aspects of the experiment and highlight any poor samples or assays.

Any additional files or specific output format should be requested in advance and may be subject to an additional charge; in particular the Final Report can be modified for input into the downstream application you require. Please note large quantities of raw data are generated (several Gb per sample) and specific arrangements may need to be made for transfer of raw data.

Illumina Gene Expression

A gene expression project will be created using Illumina Genome studio® software to carry out QC checks of the procedure and to provide final reports. As standard the following file / reports will be provided upon successful project completion: Sample Table Control, Control Probe/Gene Profile, Sample Probe/Gene Profile and Sample sheet.

Illumina_CSPro

 

 

 

Sequenom MassARRAY

The Sequenom MassARRAY system allows the precise quantification of the genetic target material and variations. It utilises a high-performance mass spectrometry (MALDI-TOF) on the Compact Instrument.

 Sequenom Massarray

 

 

Assays and Data Output*:

 

Sequenom - SNP Typing and Allele Specific Expression

The standard analysis includes manual editing of the data set, checking low quality calls and assessing the performance of the assays. The output is an excel file listing the genotype calls and quality score. A Summary Report is provided, which contains an assessment of the QC data and highlights any sample or assay related issues, providing call rates for the project. Access to the raw data is also available.

Sequenom- Methylation Analyses

This includes a file showing the methylation profile of each amplicon as well as a data file giving the methylation levels.

Any additional files should be requested in advance and may be subject to an additional charge. Access to the raw data is possible by prior arrangement.

Sequenom QGE

Data files will be generated from the Sequenom QGE software. It is anticipated that the analysis of the expression levels will be performed by the end user.

 

* Standard Projects Include Initial QC and Basic Bioinformatics Analysis.

*Any additional files or specific output format should be requested in advance and may be subject to an additional charge.