Wellcome Trust Centre for Human Genetics

GWAMA: software tool for meta analysis of whole genome association data

Download latest version:

GWAMA ver. 2.1 (for unix) (changelog)

Download sample files:

Download marker location maps:

dbsnp36.txt.gz (SNPs from dbSNP build 36)

Download R scripts for Manhattan and QQ Plots:

Download perl scripts for reformatting SNPTEST and PLINK output to GWAMA input format:

SNPTEST2GWAMA.pl (for SNPTEST v.1)

SNPTEST2_2_GWAMA.pl (for SNPTEST v.2.4 and older)

SNPTEST2.5_2_GWAMA.pl (for SNPTEST v.2.5)

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Older versions:

GWAMA ver. 1.4 (for unix) (changelog)

GWAMA ver. 1.4 (for windows) NB: for replication analysis only due to memory restictions.

GWAMA ver. 1.3.2

GWAMA ver. 1.3.1