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Sequence Alignment with monotonic gap penalties


Introduction

ariadne

prospero

file formats

installation

output

statistics

bugs

legal matters

 

Wellcome Trust Centre for Human Genetics

INSTALLATION

A compressed tarred source distribution is available for download here.

Alternatively, you can download precompiled binaries for Linux, SGI IRIX64, SunOS, OSF, Linux Alpha (thanks to Dr Frank Eisenhaber).

To compile the sources, after untarring the distribution ariadne-1.3.tar.Z type the following commands

     % cd ./SRC-1.3/
     % make

The binaries will be in the directory ./SRC-1.3/$UNAME where $UNAME is the machine architecture returned by the uname command. Either put this directory on your path or copy the binaries to a directory in your path.
NB You will need a version of make compatible with gnu make. If you don't have this, then you can compile the programs with the following commands executed in the source directory:

   cc -o ./ariadne -O -I./Include cl.c gaplib.c profile_util.c prospero_utils.c \\
    searchpath.c cmp.c profile_stat.c ariadne.c readline.c seq_util.c -lm 

   cc -o ./prospero -O -I./Include cl.c gaplib.c profile_util.c prospero_utils.c \\
    searchpath.c cmp.c profile_stat.c prospero.c readline.c seq_util.c -lm 

This will leave the executables in the source directory; they will need to be moved elsewhere by hand.


Please send Questions, Comments, and Bug Reports to Richard Mott

 
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