INTRAPID

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INTRAPID: A tool for genome wide analysis of interaction between SNPs.

This software is still under development, but a non-beta version should be released very soon.

Download latest version: ( Please note that the GSL libraries will need to be installed before compiling the codes )

Intrapid

The above link lets you download a 'tar.gz' format file, which needs to be unzipped by using a command,

tar zxfv file_name ( tar zxfv intrapid-0.3.tar.gz in this case)

Once unpacked, change over to the "Intrapid" directory, 

cd intrapid-0.3

At this stage you would need to configure "Intrapid" as per your system configuration. Use the following command for this,

configure

A simple "make" command at this stage should compile "Intrapid" for your system.

You should now have the following programs available in the your directory,

Binary Trait (Case Control Design):

CCIntrapid1block, CCIntrapid2block ( Statically compiled version )

Continuous Trait (Quantitative Trait) :

QTIntrapid1block, QTIntrapid2block ( Statically compiled version )

Download sample files:

Binary Trait (Case Control Design):

Genotype File

Phenotype File

Download File format Conversion scripts:

From SNP test to Intrapid: SNPtest2Intrapid

From PLINK to Intrapid: plink2Intrapid

Older versions:

Version - 2

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

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